All datasets dataset / brain

Brain

10X Visium spatial RNA-seq from adult mouse brain sections paired to single-nucleus RNA-seq

reference Kleshchevnikov et al., 2022
homo sapiens Organism
43 MB Size
23-06-2026 Created
Source

This datasets were generated matched single nucleus (sn, this submission) and Visium spatial RNA-seq (10X Genomics) profiles of adjacent mouse brain sections that contain multiple regions from the telencephalon and diencephalon.

used in
Spatial Simulators
references
  1. Kleshchevnikov, V., Shmatko, A., Dann, E., Aivazidis, A., King, H. W., Li, T., Elmentaite, R., Lomakin, A., Kedlian, V., Gayoso, A., Jain, M. S., Park, J. S., Ramona, L., Tuck, E., Arutyunyan, A., Vento-Tormo, R., Gerstung, M., James, L., Stegle, O., & Bayraktar, O. A. (2022). Cell2location maps fine-grained cell types in spatial transcriptomics. Nature Biotechnology, 40(5), 661–671. 10.1038/s41587-021-01139-4 ↗